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7880 - 12551
Rattus norvegicus - Deletions

Deletion length: 4671 bp

Breakpoint flanking sequences
more information in Documentation - Flanking regions


7880
5fl vs 3del
Homology length: 1 bp

Deleted region


12551
CACCTCCCTCCCCCAAAACT 5'Breakpoint ATAGCCACAGAAAAAACGAA (...) ACCTCAAACAATAGTACTAT 3'Breakpoint TATAACAGCCATACTATGTC
5fl vs 3fl
Homology length: 1 bp

CACCTCCCTCCCCCAAAACT 5'Breakpoint ATAGCCACAGAAAAAACGAA (...) ACCTCAAACAATAGTACTAT 3'Breakpoint TATAACAGCCATACTATGTC
5del vs 3del
Homology length: 2 bp

CACCTCCCTCCCCCAAAACT 5'Breakpoint ATAGCCACAGAAAAAACGAA (...) ACCTCAAACAATAGTACTAT 3'Breakpoint TATAACAGCCATACTATGTC




Two-dimensional scatterplot showing the location of the selected deletion (red diamond) versus the full dataset (grey dots). Each point represents an mtDNA rearrangement with the 5’ breakpoint on the x-axis and the 3’ breakpoint on the y-axis.

Circular mtDNA plot specifying the location of the deleted region (black bar).
Length distribution of the deleted region in the selected deletion (red bar) versus the full dataset (grey bars) .The cases were grouped 100-nt windows.

References

 [ 12 ] Jarafi, A., et al., Effect of aerobic exercise training on mtDNA deletion in soleus muscle of trained and untrained Wistar rats.British Journal of Sports Medicine. 2005. 39(8): p. 517-20.