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63839 - 58946
Podospora anserina - Deletions

Deletion length: 95420 bp

Breakpoint flanking sequences
more information in Documentation - Flanking regions


63839
5fl vs 3del
Homology length: 3 bp

Deleted region


58946
GTTCTGGATTTTGGGGGGGT 5'Breakpoint GGTTTTGGTGGAGAGGGTAG (...) GTTTTGCTCAAGCTGATGGT 3'Breakpoint TGTTTTTATATAAGTGTTGT
5fl vs 3fl
Homology length: 1 bp

GTTCTGGATTTTGGGGGGGT 5'Breakpoint GGTTTTGGTGGAGAGGGTAG (...) GTTTTGCTCAAGCTGATGGT 3'Breakpoint TGTTTTTATATAAGTGTTGT
5del vs 3del
Homology length: 3 bp

GTTCTGGATTTTGGGGGGGT 5'Breakpoint GGTTTTGGTGGAGAGGGTAG (...) GTTTTGCTCAAGCTGATGGT 3'Breakpoint TGTTTTTATATAAGTGTTGT




Two-dimensional scatterplot showing the location of the selected deletion (red diamond) versus the full dataset (grey dots). Each point represents an mtDNA rearrangement with the 5’ breakpoint on the x-axis and the 3’ breakpoint on the y-axis.
Circular mtDNA plot specifying the location of the deleted region (black bar).
Length distribution of the deleted region in the selected deletion (red bar) versus the full dataset (grey bars) .The cases were grouped 100-nt windows.

References

 [1] Jamer-Vierny, C., et al., Intramolecular cross-overs generate deleted mitochondrial DNA molecules in Podospora anserina.Current Genetics. 1997. 31(2): p. 162-70.