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16005 - 4885
Rattus norvegicus - Deletions

Deletion length: 5193 bp

Breakpoint flanking sequences
more information in Documentation - Flanking regions


16005
5fl vs 3del
Homology length: 9 bp

Deleted region


4885
GTTAAGGGTCATTTATCCTC 5'Breakpoint ATAGACAAAGCTCGAAAGAC (...) CAAAACATAATTTTATCCTC 3'Breakpoint CCAACCCTCACAGTATTAAG
5fl vs 3fl
Homology length: 1 bp

GTTAAGGGTCATTTATCCTC 5'Breakpoint ATAGACAAAGCTCGAAAGAC (...) CAAAACATAATTTTATCCTC 3'Breakpoint CCAACCCTCACAGTATTAAG




Two-dimensional scatterplot showing the location of the selected deletion (red diamond) versus the full dataset (grey dots). Each point represents an mtDNA rearrangement with the 5’ breakpoint on the x-axis and the 3’ breakpoint on the y-axis.

Circular mtDNA plot specifying the location of the deleted region (black bar).
Length distribution of the deleted region in the selected deletion (red bar) versus the full dataset (grey bars) .The cases were grouped 100-nt windows.

References

 [ 11 ] Gudikote, J. P., Van Tuyle, G. C., Rearrangements in the shorter arc of rat mitochondrial DNA involving the region of the heavy and light strand promoters.Mutation Research. 1996. 356(2): p. 275-86.