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9538 - 15658
Homo sapiens - Deletions

Deletion length: 6119 bp

Does not remove any origin of replication
Inside the major arc



Breakpoint flanking sequences
more information in Documentation - Flanking regions


9538
5fl vs 3fl
Homology length: 5 bp

Deleted region


15658
AGCCTAGCCCCTACCCCCCA 5'Breakpoint ATTAGGAGGGCACTGGCCCC (...) ATCCTCATCCTAGCAATAAT 3'Breakpoint CCCCATCCTCCATATATCCA
5del vs 3del
Homology length: 2 bp

AGCCTAGCCCCTACCCCCCA 5'Breakpoint ATTAGGAGGGCACTGGCCCC (...) ATCCTCATCCTAGCAATAAT 3'Breakpoint CCCCATCCTCCATATATCCA




Two-dimensional scatterplot showing the location of the selected deletion (red diamond) versus the full dataset (grey dots). Each point represents an mtDNA rearrangement with the 5’ breakpoint on the x-axis and the 3’ breakpoint on the y-axis.

Circular mtDNA plot specifying the location of the deleted region (black bar).
Length distribution of the deleted region in the selected deletion (red bar) versus the full dataset (grey bars) .The cases were grouped 100-nt windows.

References

 [290] Nicholas, A., et al., On the timing and the extent of clonal expansion of mtDNA deletions: evidence from single-molecule PCR. Experimental Neurology. 2009. 218(2): p. 316-9.