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5173 - 15388
Rattus norvegicus - Deletions

Deletion length: 10215 bp

Breakpoint flanking sequences
more information in Documentation - Flanking regions


5173
5fl vs 3del
Homology length: 3 bp

Deleted region


15388
TTCTCCCGCCTATCAGAAAA 5'Breakpoint AGAGGCGGGAGAAGCCTTAG (...) CCCCACCATCAACACCCAAA 3'Breakpoint GCTGATATTCTATTTAAACT
5del vs 3del
Homology length: 1 bp

TTCTCCCGCCTATCAGAAAA 5'Breakpoint AGAGGCGGGAGAAGCCTTAG (...) CCCCACCATCAACACCCAAA 3'Breakpoint GCTGATATTCTATTTAAACT




Two-dimensional scatterplot showing the location of the selected deletion (red diamond) versus the full dataset (grey dots). Each point represents an mtDNA rearrangement with the 5’ breakpoint on the x-axis and the 3’ breakpoint on the y-axis.

Circular mtDNA plot specifying the location of the deleted region (black bar).
Length distribution of the deleted region in the selected deletion (red bar) versus the full dataset (grey bars) .The cases were grouped 100-nt windows.

References

 [ 7 ] Pak, J. W., et al., MtDNA point mutations are associated with deletion mutations in aged rat.Experimental Gerontology. 2005. 40(3): p. 209-18.