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8287 - 15239
Rattus norvegicus - Deletions

Deletion length: 6952 bp

Breakpoint flanking sequences
more information in Documentation - Flanking regions


8287
5fl vs 3del
Homology length: 3 bp

Deleted region


15239
TCCGACACAAACTAAAAAAT 5'Breakpoint TCTTTAGCCCACTTCTTACC (...) ATCCTCATTCTCATACCAAT 3'Breakpoint CTCTGGAATTGTTGAAGACA
5del vs 3del
Homology length: 1 bp

TCCGACACAAACTAAAAAAT 5'Breakpoint TCTTTAGCCCACTTCTTACC (...) ATCCTCATTCTCATACCAAT 3'Breakpoint CTCTGGAATTGTTGAAGACA




Two-dimensional scatterplot showing the location of the selected deletion (red diamond) versus the full dataset (grey dots). Each point represents an mtDNA rearrangement with the 5’ breakpoint on the x-axis and the 3’ breakpoint on the y-axis.

Circular mtDNA plot specifying the location of the deleted region (black bar).
Length distribution of the deleted region in the selected deletion (red bar) versus the full dataset (grey bars) .The cases were grouped 100-nt windows.

References

 [ 2 ] Van Tuyle, G. C., et al., Multiple, large deletions in rat mitochondrial DNA: evidence for a major hot spot.Mutation Research. 1996. 349(1): p. 95-107.