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6446 - 10346
Caenorhabditis elegans - Deletions

Deletion length: 3899 bp

Breakpoint flanking sequences
more information in Documentation - Flanking regions


6446
5fl vs 3del
Homology length: 4 bp

Deleted region


10346
TTATTGATGATCTTACTAAT 5'Breakpoint ATAGCTATGATAGTTTAATT (...) TTTTGGTACTATAGAATAAT 3'Breakpoint TTAGCTTAATAGTTTATATT
5fl vs 3fl
Homology length: 1 bp

TTATTGATGATCTTACTAAT 5'Breakpoint ATAGCTATGATAGTTTAATT (...) TTTTGGTACTATAGAATAAT 3'Breakpoint TTAGCTTAATAGTTTATATT
5del vs 3del
Homology length: 2 bp

TTATTGATGATCTTACTAAT 5'Breakpoint ATAGCTATGATAGTTTAATT (...) TTTTGGTACTATAGAATAAT 3'Breakpoint TTAGCTTAATAGTTTATATT




Two-dimensional scatterplot showing the location of the selected deletion (red diamond) versus the full dataset (grey dots). Each point represents an mtDNA rearrangement with the 5’ breakpoint on the x-axis and the 3’ breakpoint on the y-axis.

Circular mtDNA plot specifying the location of the deleted region (black bar).
Length distribution of the deleted region in the selected deletion (red bar) versus the full dataset (grey bars) .The cases were grouped 100-nt windows.

References

 [2] Melov, S., et al., Detection of deletions in the mitochondrial genome of Caenorhabditis elegans.Nucleic Acids Research. 1994. 22(6): p. 1075-8.